A new version of HiPipe supporting multiple-sample analysis and data management is
open for beta testing (25 Nov 2015).
HiPipe provides high performance NGS
data analysis pipelines with intuitive user interface to the community
so that researchers with minimum IT or bioinformatics knowledge can
perform common analyses on NGS data. 3 TB of storage space is reserved
for each task. Please see Info for details.
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Genome & Exome Variant Detection
Pipelining raw sequences into BWA for
mapping and then into GATK for variant detection. Usually, a human
exome (100x) can be processed in one hour or so.